Bioconductor RNA Seq

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4.1k

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deseq2 mahattan plot RNA Seq

updated 5.1 years ago by bernatgel ▴ 150 • written 6.0 years ago by adeler001 • 0

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4.9k

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batch effect limma rna seq DE

updated 5.5 years ago by Steve Lianoglou ★ 13k • written 5.5 years ago by svlachavas ▴ 840

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1.5k

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RNA seq cpm

updated 5.6 years ago by Kevin Blighe ★ 4.0k • written 5.6 years ago by isabel.pieterse • 0

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1.5k

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sgseq alternative splicing rna seq

updated 15 months ago by Sara • 0 • written 5.9 years ago by 116100016 • 0

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1.3k

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edger RNA Seq

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by abf ▴ 30

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815

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rna seq

6.0 years ago adeler001 • 0

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1.3k

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rna seq SGSeq Alternative splicing

updated 6.1 years ago by Leonard Goldstein ▴ 260 • written 6.1 years ago by 116100016 • 0

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817

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deseq2 likelihood ratio rna seq wald test

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by adeler001 • 0

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1.4k

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volcano plot rna seq

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by adeler001 • 0

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1.9k

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limma voom RNA Seq Time-course experiments

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by mahes.muniandy • 0

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1.7k

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RNA seq wgcna

updated 6.4 years ago by Peter Langfelder ★ 3.0k • written 6.4 years ago by agustin.gonvi ▴ 20

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2.7k

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rna seq trimmomatic trimming adapter trimming paired analysis

6.5 years ago Mozart ▴ 30

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2.2k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.7 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40