Bioconductor RNA Seq

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3.3k

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deseq2 mahattan plot RNA Seq

updated 4.2 years ago by bernatgel ▴ 150 • written 5.2 years ago by adeler001 • 0

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3.9k

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batch effect limma rna seq DE

updated 4.7 years ago by Steve Lianoglou ★ 13k • written 4.7 years ago by svlachavas ▴ 840

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951

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RNA seq cpm

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by isabel.pieterse • 0

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1.2k

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sgseq alternative splicing rna seq

updated 5 months ago by Sara • 0 • written 5.1 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by abf ▴ 30

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661

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rna seq

5.1 years ago adeler001 • 0

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1.0k

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rna seq SGSeq Alternative splicing

updated 5.2 years ago by Leonard Goldstein ▴ 260 • written 5.2 years ago by 116100016 • 0

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678

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deseq2 likelihood ratio rna seq wald test

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.5k

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limma voom RNA Seq Time-course experiments

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by mahes.muniandy • 0

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1.3k

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RNA seq wgcna

updated 5.6 years ago by Peter Langfelder ★ 3.0k • written 5.6 years ago by agustin.gonvi ▴ 20

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2.3k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.7 years ago Mozart ▴ 30

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1.9k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.9 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

Recent ...

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Votes

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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Popular Question to gingergeiger22 • 0